IL_4D67_165

3D structure

PDB id

4D67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GCGGGUCCG*CGC

Length

12 nucleotides

Bulged bases

4D67|1|2|G|474, 4D67|1|2|U|475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4D67_165 not in the Motif Atlas

Geometric match to IL_4YHW_002

Geometric discrepancy: 0.2617

The information below is about IL_4YHW_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4D67|1|2|G|470
4D67|1|2|C|471
4D67|1|2|G|472
4D67|1|2|G|473
4D67|1|2|G|474
4D67|1|2|U|475
4D67|1|2|C|476
4D67|1|2|C|477
4D67|1|2|G|478
*
4D67|1|2|C|665
4D67|1|2|G|666
4D67|1|2|C|667

Current chains

Chain 2

28S RRNA

Nearby chains

Chain C

60S RIBOSOMAL PROTEIN L4

Chain t

60S RIBOSOMAL PROTEIN L28