IL_4D67_185

3D structure

PDB id

4D67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GGAGU*GCGCC

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4D67_185 not in the Motif Atlas

Geometric match to IL_8D29_010

Geometric discrepancy: 0.3323

The information below is about IL_8D29_010

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.1

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

10

Unit IDs

4D67|1|2|G|2518
4D67|1|2|G|2519
4D67|1|2|A|2520
4D67|1|2|G|2521
4D67|1|2|U|2522
*
4D67|1|2|G|2748
4D67|1|2|C|2749
4D67|1|2|G|2750
4D67|1|2|C|2751
4D67|1|2|C|2752

Current chains

Chain 2

28S RRNA

Nearby chains

Chain 3

5.8S ribosomal RNA; 5.8S rRNA

Chain g

60S RIBOSOMAL PROTEIN L34

Chain k

60S RIBOSOMAL PROTEIN L38