IL_4D67_206
3D structure
- PDB id
- 4D67 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- UAA*UCGA
- Length
- 7 nucleotides
- Bulged bases
- 4D67|1|3|G|94
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4D67_206 not in the Motif Atlas
- Homologous match to IL_8P9A_371
- Geometric discrepancy: 0.1719
- The information below is about IL_8P9A_371
- Detailed Annotation
- Isolated non-canonical cWW with bulges
- Broad Annotation
- Isolated non-canonical cWW with bulges
- Motif group
- IL_07785.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 33
Unit IDs
4D67|1|3|U|64
4D67|1|3|A|65
4D67|1|3|A|66
*
4D67|1|3|U|92
4D67|1|3|C|93
4D67|1|3|G|94
4D67|1|3|A|95
Current chains
- Chain 3
- 5.8S RRNA
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain Y
- 60S RIBOSOMAL PROTEIN L26
- Chain h
- 60S RIBOSOMAL PROTEIN L35
- Chain j
- 60S RIBOSOMAL PROTEIN L37
Coloring options: