IL_4DR1_044

3D structure

PDB id

4DR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the apo 30S ribosomal subunit from Thermus thermophilus (HB8)

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GCU*G(2MG)C

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4DR1_044 not in the Motif Atlas

Geometric match to IL_5F5F_003

Geometric discrepancy: 0.2147

The information below is about IL_5F5F_003

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

4DR1|1|A|G|1050
4DR1|1|A|C|1051
4DR1|1|A|U|1052
*
4DR1|1|A|G|1206
4DR1|1|A|2MG|1207
4DR1|1|A|C|1208

Current chains

Chain A

16S rRNA

Nearby chains

Chain C

30S ribosomal protein S3

Chain N

30S ribosomal protein S14