IL_4DR3_056

3D structure

PDB id

4DR3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with streptomycin bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4DR3_056 not in the Motif Atlas

Homologous match to IL_4LFB_055

Geometric discrepancy: 0.0848

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

4DR3|1|A|C|1303
4DR3|1|A|G|1304
4DR3|1|A|G|1305
4DR3|1|A|A|1306
4DR3|1|A|U|1307
4DR3|1|A|U|1308
*
4DR3|1|A|A|1329
4DR3|1|A|U|1330
4DR3|1|A|G|1331
4DR3|1|A|A|1332
4DR3|1|A|A|1333
4DR3|1|A|G|1334

Current chains

Chain A

16S rRNA

Nearby chains

Chain M

30S ribosomal protein S13

Chain U

30S ribosomal protein THX