IL_4DR5_052
3D structure
- PDB id
- 4DR5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered cognate transfer RNA anticodon stem-loop and streptomycin bound
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.45 Å
Loop
- Sequence
- GAUG*CUAAUC
- Length
- 10 nucleotides
- Bulged bases
- 4DR5|1|A|U|1257, 4DR5|1|A|A|1280, 4DR5|1|A|U|1281
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4DR5_052 not in the Motif Atlas
- Homologous match to IL_6CZR_161
- Geometric discrepancy: 0.2599
- The information below is about IL_6CZR_161
- Detailed Annotation
- 180 degree turn
- Broad Annotation
- No text annotation
- Motif group
- IL_11344.1
- Basepair signature
- cWW-cSS-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
4DR5|1|A|G|1255
4DR5|1|A|A|1256
4DR5|1|A|U|1257
4DR5|1|A|G|1258
*
4DR5|1|A|C|1277
4DR5|1|A|U|1278
4DR5|1|A|A|1279
4DR5|1|A|A|1280
4DR5|1|A|U|1281
4DR5|1|A|C|1282
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain C
- 30S ribosomal protein S3
- Chain J
- 30S ribosomal protein S10
- Chain N
- 30S ribosomal protein S14
Coloring options: