IL_4DR5_055
3D structure
- PDB id
- 4DR5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered cognate transfer RNA anticodon stem-loop and streptomycin bound
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.45 Å
Loop
- Sequence
- CGGAUU*AUGAAG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4DR5_055 not in the Motif Atlas
- Geometric match to IL_4LFB_055
- Geometric discrepancy: 0.0742
- The information below is about IL_4LFB_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_85536.2
- Basepair signature
- cWW-tSH-L-R-tHS-cWW-cWW
- Number of instances in this motif group
- 8
Unit IDs
4DR5|1|A|C|1303
4DR5|1|A|G|1304
4DR5|1|A|G|1305
4DR5|1|A|A|1306
4DR5|1|A|U|1307
4DR5|1|A|U|1308
*
4DR5|1|A|A|1329
4DR5|1|A|U|1330
4DR5|1|A|G|1331
4DR5|1|A|A|1332
4DR5|1|A|A|1333
4DR5|1|A|G|1334
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain M
- 30S ribosomal protein S13
- Chain S
- 30S ribosomal protein S19
- Chain U
- 30S ribosomal protein THX
Coloring options: