3D structure

PDB id
4DV0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U20G
Experimental method
X-RAY DIFFRACTION
Resolution
3.85 Å

Loop

Sequence
G(PSU)GCCAG*CGGUAAUAC
Length
16 nucleotides
Bulged bases
4DV0|1|A|A|532, 4DV0|1|A|U|534
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4DV0_022 not in the Motif Atlas
Geometric match to IL_4V88_415
Geometric discrepancy: 0.2777
The information below is about IL_4V88_415
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_54177.1
Basepair signature
cWW-cSW-tWH-L-R-L-R-tHS-cWW
Number of instances in this motif group
5

Unit IDs

4DV0|1|A|G|515
4DV0|1|A|PSU|516
4DV0|1|A|G|517
4DV0|1|A|C|518
4DV0|1|A|C|519
4DV0|1|A|A|520
4DV0|1|A|G|521
*
4DV0|1|A|C|528
4DV0|1|A|G|529
4DV0|1|A|G|530
4DV0|1|A|U|531
4DV0|1|A|A|532
4DV0|1|A|A|533
4DV0|1|A|U|534
4DV0|1|A|A|535
4DV0|1|A|C|536

Current chains

Chain A
16S rRNA

Nearby chains

Chain C
ribosomal protein S3
Chain D
ribosomal protein S4
Chain L
ribosomal protein S12

Coloring options:


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