IL_4DV0_030

3D structure

PDB id

4DV0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U20G

Experimental method

X-RAY DIFFRACTION

Resolution

3.85 Å

Loop

Sequence

GAGAG*UGGU

Length

9 nucleotides

Bulged bases

4DV0|1|A|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4DV0_030 not in the Motif Atlas

Homologous match to IL_4LFB_029

Geometric discrepancy: 0.0886

The information below is about IL_4LFB_029

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

4DV0|1|A|G|662
4DV0|1|A|A|663
4DV0|1|A|G|664
4DV0|1|A|A|665
4DV0|1|A|G|666
*
4DV0|1|A|U|740
4DV0|1|A|G|741
4DV0|1|A|G|742
4DV0|1|A|U|743

Current chains

Chain A

16S rRNA

Nearby chains

Chain F

ribosomal protein S6

Chain O

ribosomal protein S15

Chain R

ribosomal protein S18