IL_4DV1_025
3D structure
- PDB id
- 4DV1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U20G, bound with streptomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.85 Å
Loop
- Sequence
- UGUAG*UGAGG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4DV1_025 not in the Motif Atlas
- Homologous match to IL_4LFB_023
- Geometric discrepancy: 0.102
- The information below is about IL_4LFB_023
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.7
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 14
Unit IDs
4DV1|1|A|U|580
4DV1|1|A|G|581
4DV1|1|A|U|582
4DV1|1|A|A|583
4DV1|1|A|G|584
*
4DV1|1|A|U|757
4DV1|1|A|G|758
4DV1|1|A|A|759
4DV1|1|A|G|760
4DV1|1|A|G|761
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain L
- ribosomal protein S12
- Chain O
- ribosomal protein S15
- Chain Q
- ribosomal protein S17
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