IL_4DV2_046

3D structure

PDB id

4DV2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, C912A

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

UGG*UCAGCA

Length

9 nucleotides

Bulged bases

4DV2|1|A|C|1200, 4DV2|1|A|A|1201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4DV2_046 not in the Motif Atlas

Geometric match to IL_4V88_451

Geometric discrepancy: 0.2915

The information below is about IL_4V88_451

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_97255.1

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

4DV2|1|A|U|1056
4DV2|1|A|G|1057
4DV2|1|A|G|1058
*
4DV2|1|A|U|1199
4DV2|1|A|C|1200
4DV2|1|A|A|1201
4DV2|1|A|G|1202
4DV2|1|A|C|1203
4DV2|1|A|A|1204

Current chains

Chain A

16S rRNA

Nearby chains

Chain C

ribosomal protein S3

Chain J

ribosomal protein S10

Chain N

ribosomal protein S14