IL_4DV2_066

3D structure

PDB id

4DV2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, C912A

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

CUCU*AGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4DV2_066 not in the Motif Atlas

Geometric match to IL_402D_001

Geometric discrepancy: 0.2214

The information below is about IL_402D_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

4DV2|1|A|C|1424
4DV2|1|A|U|1425
4DV2|1|A|C|1426
4DV2|1|A|U|1427
*
4DV2|1|A|A|1473
4DV2|1|A|G|1474
4DV2|1|A|G|1475
4DV2|1|A|G|1476

Current chains

Chain A

16S rRNA

Nearby chains