IL_4DV2_084

3D structure

PDB id

4DV2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, C912A

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

(5MC)ACG*CGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4DV2_084 not in the Motif Atlas

Geometric match to IL_1GID_008

Geometric discrepancy: 0.3894

The information below is about IL_1GID_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

4DV2|1|A|5MC|1407
4DV2|1|A|A|1408
4DV2|1|A|C|1409
4DV2|1|A|G|1410
*
4DV2|1|A|C|1490
4DV2|1|A|G|1491
4DV2|1|A|A|1492
4DV2|1|A|A|1493
4DV2|1|A|G|1494

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

ribosomal protein S12