IL_4DV4_007

3D structure

PDB id

4DV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, A914G

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

GCGGGG*CUCCGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4DV4_007 not in the Motif Atlas

Geometric match to IL_4EYA_005

Geometric discrepancy: 0.3437

The information below is about IL_4EYA_005

Detailed Annotation

Tandem non-canonical cWW pairs with near WC pairs

Broad Annotation

Tandem non-canonical cWW pairs with near WC pairs

Motif group

IL_82292.2

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

4DV4|1|A|G|75
4DV4|1|A|C|76
4DV4|1|A|G|77
4DV4|1|A|G|78
4DV4|1|A|G|79
4DV4|1|A|G|80
*
4DV4|1|A|C|89
4DV4|1|A|U|90
4DV4|1|A|C|91
4DV4|1|A|C|92
4DV4|1|A|G|93
4DV4|1|A|U|95

Current chains

Chain A

16S rRNA

Nearby chains