IL_4DV5_030

3D structure

PDB id

4DV5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, A914G, bound with streptomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.68 Å

Loop

Sequence

GAGAG*UGGU

Length

9 nucleotides

Bulged bases

4DV5|1|A|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4DV5_030 not in the Motif Atlas

Homologous match to IL_4LFB_029

Geometric discrepancy: 0.0864

The information below is about IL_4LFB_029

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

4DV5|1|A|G|662
4DV5|1|A|A|663
4DV5|1|A|G|664
4DV5|1|A|A|665
4DV5|1|A|G|666
*
4DV5|1|A|U|740
4DV5|1|A|G|741
4DV5|1|A|G|742
4DV5|1|A|U|743

Current chains

Chain A

16S rRNA

Nearby chains

Chain F

ribosomal protein S6

Chain O

ribosomal protein S15

Chain R

ribosomal protein S18