3D structure

PDB id
4E8M (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of K+ and Mg2+
Experimental method
X-RAY DIFFRACTION
Resolution
3.5 Å

Loop

Sequence
UA*UACG
Length
6 nucleotides
Bulged bases
4E8M|1|A|A|376, 4E8M|1|A|C|377
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4E8M_013 not in the Motif Atlas
Geometric match to IL_3IGI_013
Geometric discrepancy: 0.1491
The information below is about IL_3IGI_013
Detailed Annotation
Multiple bulged bases
Broad Annotation
No text annotation
Motif group
IL_44609.1
Basepair signature
cWW-cWW
Number of instances in this motif group
28

Unit IDs

4E8M|1|A|U|365
4E8M|1|A|A|366
*
4E8M|1|A|U|375
4E8M|1|A|A|376
4E8M|1|A|C|377
4E8M|1|A|G|378

Current chains

Chain A
Group IIC intron

Nearby chains

No other chains within 10Å

Coloring options:


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