IL_4FAU_014

3D structure

PDB id

4FAU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron in the presence of Li+, Mg2+ and 5'-exon

Experimental method

X-RAY DIFFRACTION

Resolution

2.87 Å

Loop

Sequence

UA*UACG

Length

6 nucleotides

Bulged bases

4FAU|1|A|A|376, 4FAU|1|A|C|377

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4FAU_014 not in the Motif Atlas

Geometric match to IL_3IGI_013

Geometric discrepancy: 0.1022

The information below is about IL_3IGI_013

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.2

Basepair signature

cWW-cWW

Number of instances in this motif group

24

Unit IDs

4FAU|1|A|U|365
4FAU|1|A|A|366
*
4FAU|1|A|U|375
4FAU|1|A|A|376
4FAU|1|A|C|377
4FAU|1|A|G|378

Current chains

Chain A

Group IIC intron

Nearby chains