IL_4FRG_005

3D structure

PDB id

4FRG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the cobalamin riboswitch aptamer domain

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

AAAAGCAUAG*CCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4FRG_005 not in the Motif Atlas

Geometric match to IL_4FRG_001

Geometric discrepancy: 0.1195

The information below is about IL_4FRG_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_88072.1

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

1

Unit IDs

4FRG|1|X|A|6
4FRG|1|X|A|7
4FRG|1|X|A|8
4FRG|1|X|A|9
4FRG|1|X|G|10
4FRG|1|X|C|11
4FRG|1|X|A|12
4FRG|1|X|U|13
4FRG|1|X|A|14
4FRG|1|X|G|15
*
4FRG|1|X|C|76
4FRG|1|X|C|77
4FRG|1|X|U|78

Current chains

Chain X

cobalamin riboswitch aptamer domain

Nearby chains