4FRG Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4FRG_001 | 1/B/28:36 | T-loop with 2 bulged bases not stacked HL_13999.2 | ||
| HL_4FRG_002 | 1/B/46:51 | GNRA HL_34789.2 | ||
| HL_4FRG_003 | 1/B/58:66 | T-loop with unstacked turn HL_27670.3 | ||
| HL_4FRG_004 | 1/X/28:36 | T-loop with 2 bulged bases not stacked | geometric HL_4FRG_001 HL_13999.2 | |
| HL_4FRG_005 | 1/X/46:51 | GNRA | geometric HL_4FRG_002 HL_34789.2 | |
| HL_4FRG_006 | 1/X/58:66 | T-loop with unstacked turn | geometric HL_4FRG_003 HL_27670.3 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4FRG_001 | 1/B/6:15, 1/B/76:78 | No text annotation IL_88072.1 | ||
| IL_4FRG_002 | 1/B/23:25, 1/B/39:40 | Single bulged U IL_97561.2 | ||
| IL_4FRG_005 | 1/X/6:15, 1/X/76:78 | No text annotation | geometric IL_4FRG_001 IL_88072.1 | |
| IL_4FRG_004 | 1/X/23:25, 1/X/39:40 | Single bulged U | geometric IL_4FRG_002 IL_97561.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4FRG_003 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J4_4FRG_001 | 1/B/18:23, 1/B/40:43, 1/B/54:56, 1/B/68:73 | Cobalamin riboswitch junction J4_25222.1 | ||
| J4_4FRG_002 | 1/X/18:23, 1/X/40:43, 1/X/54:56, 1/X/68:73 | Cobalamin riboswitch junction | homologous J4_4FRG_001 J4_25222.1 |
Problematic loops
No problematic loops
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