3D structure

PDB id
4GKK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human mitochondrial anticodon stem loop (ASL) of transfer RNA Methionine (TRNAMET) bound to an mRNA with an AUA-codon in the A-site and paromomycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GAUG*CUAAUC
Length
10 nucleotides
Bulged bases
4GKK|1|A|U|1238, 4GKK|1|A|A|1261, 4GKK|1|A|U|1262
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4GKK_050 not in the Motif Atlas
Homologous match to IL_6CZR_161
Geometric discrepancy: 0.5788
The information below is about IL_6CZR_161
Detailed Annotation
180 degree turn
Broad Annotation
No text annotation
Motif group
IL_11344.1
Basepair signature
cWW-cSS-L-R-cWW
Number of instances in this motif group
3

Unit IDs

4GKK|1|A|G|1236
4GKK|1|A|A|1237
4GKK|1|A|U|1238
4GKK|1|A|G|1239
*
4GKK|1|A|C|1258
4GKK|1|A|U|1259
4GKK|1|A|A|1260
4GKK|1|A|A|1261
4GKK|1|A|U|1262
4GKK|1|A|C|1263

Current chains

Chain A
16S rRNA

Nearby chains

Chain C
30S ribosomal protein S3
Chain J
30S ribosomal protein S10
Chain N
30S ribosomal protein S14 type Z

Coloring options:


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