IL_4GXY_005

3D structure

PDB id

4GXY (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNA structure

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

GGGAG*CGAGGAUC

Length

13 nucleotides

Bulged bases

4GXY|1|A|G|142

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.1

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

7

Unit IDs

4GXY|1|A|G|82
4GXY|1|A|G|83
4GXY|1|A|G|84
4GXY|1|A|A|85
4GXY|1|A|G|86
*
4GXY|1|A|C|139
4GXY|1|A|G|140
4GXY|1|A|A|141
4GXY|1|A|G|142
4GXY|1|A|G|143
4GXY|1|A|A|144
4GXY|1|A|U|145
4GXY|1|A|C|146

Current chains

Chain A

Adenosylcobalamin riboswitch

Nearby chains