IL_4IO9_034
3D structure
- PDB id
- 4IO9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- UCCCUAAA*UA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4IO9_034 not in the Motif Atlas
- Geometric match to IL_7A0S_034
- Geometric discrepancy: 0.056
- The information below is about IL_7A0S_034
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_11411.1
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 12
Unit IDs
4IO9|1|X|U|1015
4IO9|1|X|C|1016
4IO9|1|X|C|1017
4IO9|1|X|C|1018
4IO9|1|X|U|1019
4IO9|1|X|A|1020
4IO9|1|X|A|1021
4IO9|1|X|A|1022
*
4IO9|1|X|U|1161
4IO9|1|X|A|1162
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain G
- 50S ribosomal protein L13
- Chain N
- 50S ribosomal protein L20
Coloring options: