IL_4IO9_047

3D structure

PDB id

4IO9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGGAGAAG*UGGAG

Length

13 nucleotides

Bulged bases

4IO9|1|X|A|1224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4IO9_047 not in the Motif Atlas

Homologous match to IL_7A0S_043

Geometric discrepancy: 0.0904

The information below is about IL_7A0S_043

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

4IO9|1|X|C|1221
4IO9|1|X|G|1222
4IO9|1|X|G|1223
4IO9|1|X|A|1224
4IO9|1|X|G|1225
4IO9|1|X|A|1226
4IO9|1|X|A|1227
4IO9|1|X|G|1228
*
4IO9|1|X|U|1247
4IO9|1|X|G|1248
4IO9|1|X|G|1249
4IO9|1|X|A|1250
4IO9|1|X|G|1251

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain I

50S ribosomal protein L15

Chain N

50S ribosomal protein L20

Chain P

50S ribosomal protein L22