IL_4IO9_054

3D structure

PDB id

4IO9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGGAG*CGUUGAAA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4IO9_054 not in the Motif Atlas

Homologous match to IL_7A0S_050

Geometric discrepancy: 0.4653

The information below is about IL_7A0S_050

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_28245.1

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

4IO9|1|X|U|1426
4IO9|1|X|G|1427
4IO9|1|X|G|1428
4IO9|1|X|A|1429
4IO9|1|X|G|1430
*
4IO9|1|X|C|1598
4IO9|1|X|G|1599
4IO9|1|X|U|1600
4IO9|1|X|U|1601
4IO9|1|X|G|1602
4IO9|1|X|A|1603
4IO9|1|X|A|1604
4IO9|1|X|A|1605

Current chains

Chain X

23S ribosomal RNA

Nearby chains