IL_4IO9_069

3D structure

PDB id

4IO9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGUAAC*GAAGAAG

Length

13 nucleotides

Bulged bases

4IO9|1|X|G|1716

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4IO9_069 not in the Motif Atlas

Homologous match to IL_7A0S_063

Geometric discrepancy: 0.0796

The information below is about IL_7A0S_063

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_20700.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

10

Unit IDs

4IO9|1|X|C|1703
4IO9|1|X|G|1704
4IO9|1|X|U|1705
4IO9|1|X|A|1706
4IO9|1|X|A|1707
4IO9|1|X|C|1708
*
4IO9|1|X|G|1713
4IO9|1|X|A|1714
4IO9|1|X|A|1715
4IO9|1|X|G|1716
4IO9|1|X|A|1717
4IO9|1|X|A|1718
4IO9|1|X|G|1719

Current chains

Chain X

23S ribosomal RNA

Nearby chains