IL_4IO9_071

3D structure

PDB id

4IO9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGCCAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

4IO9|1|X|C|1792, 4IO9|1|X|C|1808, 4IO9|1|X|U|1812

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4IO9_071 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0602

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

4IO9|1|X|U|1789
4IO9|1|X|G|1790
4IO9|1|X|C|1791
4IO9|1|X|C|1792
4IO9|1|X|A|1793
4IO9|1|X|A|1794
4IO9|1|X|C|1795
*
4IO9|1|X|G|1805
4IO9|1|X|G|1806
4IO9|1|X|A|1807
4IO9|1|X|C|1808
4IO9|1|X|G|1809
4IO9|1|X|U|1810
4IO9|1|X|A|1811
4IO9|1|X|U|1812
4IO9|1|X|A|1813

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2