IL_4IO9_102
3D structure
- PDB id
- 4IO9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- CCGCU*AUG
- Length
- 8 nucleotides
- Bulged bases
- 4IO9|1|X|U|2706
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4IO9_102 not in the Motif Atlas
- Homologous match to IL_5J7L_347
- Geometric discrepancy: 0.0833
- The information below is about IL_5J7L_347
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.11
- Basepair signature
- cWW-cWS-cSH-tWH-cWW-L
- Number of instances in this motif group
- 19
Unit IDs
4IO9|1|X|C|2659
4IO9|1|X|C|2660
4IO9|1|X|G|2661
4IO9|1|X|C|2662
4IO9|1|X|U|2663
*
4IO9|1|X|A|2705
4IO9|1|X|U|2706
4IO9|1|X|G|2707
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain B
- 50S ribosomal protein L3
- Chain H
- 50S ribosomal protein L14
- Chain K
- 50S ribosomal protein L17
- Chain M
- 50S ribosomal protein L19
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