IL_4IO9_103
3D structure
- PDB id
- 4IO9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- UCUCC*GGUAG
- Length
- 10 nucleotides
- Bulged bases
- 4IO9|1|X|U|2668, 4IO9|1|X|C|2669
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4IO9_103 not in the Motif Atlas
- Homologous match to IL_7A0S_096
- Geometric discrepancy: 0.0985
- The information below is about IL_7A0S_096
- Detailed Annotation
- UAA/GAN related, with intercalation
- Broad Annotation
- UAA/GAN related, with intercalation
- Motif group
- IL_82016.1
- Basepair signature
- cWW-L-tHS-L-cWW
- Number of instances in this motif group
- 4
Unit IDs
4IO9|1|X|U|2666
4IO9|1|X|C|2667
4IO9|1|X|U|2668
4IO9|1|X|C|2669
4IO9|1|X|C|2670
*
4IO9|1|X|G|2698
4IO9|1|X|G|2699
4IO9|1|X|U|2700
4IO9|1|X|A|2701
4IO9|1|X|G|2702
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain B
- 50S ribosomal protein L3
- Chain K
- 50S ribosomal protein L17
- Chain M
- 50S ribosomal protein L19
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