IL_4IOA_026

3D structure

PDB id

4IOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGUAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

5x5 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_39521.3

Basepair signature

cWW-tSH-tWH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

4IOA|1|X|U|871
4IOA|1|X|G|872
4IOA|1|X|U|873
4IOA|1|X|A|874
4IOA|1|X|G|875
*
4IOA|1|X|C|927
4IOA|1|X|G|928
4IOA|1|X|A|929
4IOA|1|X|A|930
4IOA|1|X|G|931

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L16

Chain S

50S ribosomal protein L25

Chain T

50S ribosomal protein L27

Chain Y

5S ribosomal RNA; 5S rRNA