Motif IL_39521.3 Version IL_39521.3 of this group appears in releases 3.18 to 3.47
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-3 | 2-9 | 3-8 | 4-7 | 5-6 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4IOA_026 | 4IOA | 0.5905 | 0 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | X | LSU rRNA | U | 871 | G | 872 | U | 873 | A | 874 | G | 875 | * | C | 927 | G | 928 | A | 929 | A | 930 | G | 931 | cWW | ncSH | tWH | tHS | cWW | |
| 2 | IL_5J7L_300 | 5J7L | 0.4475 | 0 | tSH-tHW-tHS | DA | LSU rRNA | U | 1474 | G | 1475 | U | 1476 | A | 1477 | G | 1478 | * | U | 1513 | G | 1514 | A | 1515 | G | 1516 | G | 1517 | cWW | tSH | tWH | tHS | cWW | |
| 3 | IL_2QWY_007 | 2QWY | 0.4868 | 0 | tSH-tHW-tHS | C | SAM-II riboswitch | C | 16 | G | 17 | U | 18 | A | 19 | U | 20 | * | A | 46 | A | 47 | A | 48 | A | 49 | G | 50 | cWW | tSH | tWH | tHS | cWW | |
| 4 | IL_4V9F_055 | 4V9F | 0.2897 | 0 | tSH-tHW-tHS | 0 | LSU rRNA | G | 1542 | G | 1543 | U | 1544 | C | 1545 | G | 1546 | * | U | 1639 | C | 1640 | A | 1641 | A | 1642 | C | 1643 | cWW | tSH | tWH | tHS | cWW | |
| 5 | IL_4V9F_022 | 4V9F | 0.2455 | 0 | tSH-tHW-tHS | 0 | LSU rRNA | C | 705 | G | 706 | C | 707 | A | 708 | G | 709 | * | C | 719 | G | 720 | A | 721 | G | 722 | G | 723 | cWW | tSH | tWH | tHS | cWW | |
| 6 | IL_6CZR_145 | 6CZR | 0.1660 | 0 | tSH-tHW-tHS | 1a | SSU rRNA | G | 783 | G | 784 | U | 785 | A | 786 | G | 787 | * | C | 763 | A | 764 | A | 765 | A | 766 | C | 767 | cWW | tSH | tWH | tHS | cWW | |
| 7 | IL_5J7L_037 | 5J7L | 0.1703 | 0 | tSH-tHW-tHS | AA | SSU rRNA | G | 799 | G | 800 | U | 801 | A | 802 | G | 803 | * | C | 779 | A | 780 | A | 781 | A | 782 | C | 783 | cWW | tSH | tWH | tHS | cWW | |
| 8 | IL_4LFB_033 | 4LFB | 0.1553 | 0 | tSH-tHW-tHS | A | SSU rRNA | G | 799 | G | 800 | U | 801 | A | 802 | G | 803 | * | C | 779 | A | 780 | A | 781 | A | 782 | C | 783 | cWW | tSH | tWH | tHS | cWW | |
| 9 | IL_4V88_436 | 4V88 | 0.0000 | 0 | tSH-tHW-tHS | A6 | SSU rRNA | C | 1010 | G | 1011 | U | 1012 | A | 1013 | G | 1014 | * | C | 990 | G | 991 | A | 992 | A | 993 | G | 994 | cWW | tSH | tWH | tHS | cWW | |
| 10 | IL_4V88_418 | 4V88 | 0.1589 | 0 | tSH-tHW-tHS | A6 | SSU rRNA | C | 627 | G | 628 | U | 629 | A | 630 | G | 631 | * | U | 968 | C | 969 | A | 970 | A | 971 | G | 972 | cWW | tSH | tWH | tHS | cWW | |
| 11 | IL_6CZR_135 | 6CZR | 0.2094 | 0 | tSH-tHW-tHS | 1a | SSU rRNA | U | 564 | G | 565 | U | 566 | A | 567 | G | 568 | * | U | 741 | G | 742 | A | 743 | G | 744 | G | 745 | cWW | ntSH | tWH | tHS | cWW | |
| 12 | IL_4LFB_023 | 4LFB | 0.1872 | 0 | tSH-tHW-tHS | A | SSU rRNA | U | 580 | G | 581 | U | 582 | A | 583 | G | 584 | * | U | 757 | G | 758 | A | 759 | G | 760 | G | 761 | cWW | tSH | tWH | tHS | cWW | |
| 13 | IL_5J7L_027 | 5J7L | 0.2117 | 0 | tSH-tHW-tHS | AA | SSU rRNA | C | 580 | G | 581 | C | 582 | A | 583 | G | 584 | * | U | 757 | C | 758 | A | 759 | G | 760 | G | 761 | cWW | tSH | tWH | tHS | cWW | |
| 14 | IL_4IOA_051 | 4IOA | 0.2877 | 0 | tSH-tHW-tHS | X | LSU rRNA | C | 1383 | G | 1384 | C | 1385 | A | 1386 | G | 1387 | * | U | 1370 | G | 1371 | A | 1372 | G | 1373 | G | 1374 | cWW | ncSH | ntSH | tWH | tHS | cWW |
| 15 | IL_5J7L_293 | 5J7L | 0.2308 | 0 | tSH-tHW-tHS | DA | LSU rRNA | C | 1370 | G | 1371 | U | 1372 | A | 1373 | G | 1374 | * | C | 1357 | G | 1358 | A | 1359 | G | 1360 | G | 1361 | cWW | tSH | tWH | tHS | cWW | |
| 16 | IL_4WF9_052 | 4WF9 | 0.4436 | 0 | tSH-tHW-tHS | X | LSU rRNA | C | 1407 | G | 1408 | U | 1409 | A | 1410 | G | 1411 | * | U | 1394 | G | 1395 | A | 1396 | G | 1397 | G | 1398 | cWW | ntSH | ntWH | cWW | ||
| 17 | IL_4Y4O_229 | 4Y4O | 0.5131 | 0 | tSH-tHW-tHS | 2A | LSU rRNA | C | 1370 | G | 1371 | U | 1372 | A | 1373 | G | 1374 | * | U | 1357 | G | 1358 | A | 1359 | A | 1360 | G | 1361 | cWW | tSH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGUAG*UGAGG | 3 |
| GGUAG*CAAAC | 3 |
| UGUAG*CGAAG | 1 |
| CGUAU*AAAAG | 1 |
| GGUCG*UCAAC | 1 |
| CGCAG*CGAGG | 1 |
| CGUAG*CGAAG | 1 |
| CGUAG*UCAAG | 1 |
| CGCAG*UCAGG | 1 |
| CGCAG*UGAGG | 1 |
| CGUAG*CGAGG | 1 |
| CGUAG*UGAGG | 1 |
| CGUAG*UGAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUA*GAG | 5 |
| GUA*AAA | 4 |
| GUA*GAA | 3 |
| GCA*GAG | 2 |
| GUC*CAA | 1 |
| GUA*CAA | 1 |
| GCA*CAG | 1 |
Release history
| Release | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2019-05-03 | 2019-05-31 | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 | 2019-11-13 | 2019-12-11 | 2020-01-08 | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 | 2021-04-28 | 2021-05-26 | 2021-06-23 | 2021-07-21 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- tSH-tHW-tHS (16)
- 5x5 Sarcin-Ricin with intercalated A; G-bulge (1)
- Basepair signature
- cWW-tSH-tWH-tHS-cWW
- Heat map statistics
- Min 0.06 | Avg 0.37 | Max 0.76
Coloring options: