IL_4IOA_035

3D structure

PDB id

4IOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUCAGUG*CUCAAG

Length

13 nucleotides

Bulged bases

4IOA|1|X|C|1152, 4IOA|1|X|A|1154

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57188.1

Basepair signature

cWW-tWW-cSH-L-tWW-cSH-cWW

Number of instances in this motif group

5

Unit IDs

4IOA|1|X|C|1029
4IOA|1|X|U|1030
4IOA|1|X|C|1031
4IOA|1|X|A|1032
4IOA|1|X|G|1033
4IOA|1|X|U|1034
4IOA|1|X|G|1035
*
4IOA|1|X|C|1150
4IOA|1|X|U|1151
4IOA|1|X|C|1152
4IOA|1|X|A|1153
4IOA|1|X|A|1154
4IOA|1|X|G|1155

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain E

50S ribosomal protein L6

Chain G

50S ribosomal protein L13