Motif IL_57188.1 Version IL_57188.1 of this group appears in releases 3.2 to 3.47
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 1-11 | 2-4 | 2-10 | 4-9 | 4-10 | 5-6 | 7-8 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5J7L_280 | 5J7L | 0.0742 | 1 | Kink-turn related | DA | LSU rRNA | U | 1018 | U | 1019 | A | 1020 | A | 1021 | G | 1022 | U | 1023 | G | 1024 | * | C | 1140 | U | 1141 | A | 1142 | A | 1144 | cWW | ncSH | tWW | tWW | ntWW | cSH | cWW |
| 2 | IL_4V9F_040 | 4V9F | 0.0685 | 2 | Kink-turn related | 0 | LSU rRNA | U | 1115 | U | 1116 | A | 1117 | A | 1118 | G | 1119 | U | 1120 | G | 1121 | * | C | 1243 | U | 1244 | A | 1246 | A | 1248 | cWW | ncSH | tWW | tWW | cSH | cWW | |
| 3 | IL_4Y4O_216 | 4Y4O | 0.0000 | 2 | 2A | LSU rRNA | C | 1018 | U | 1019 | A | 1020 | A | 1021 | G | 1022 | U | 1023 | G | 1024 | * | C | 1140 | U | 1141 | A | 1142|||A | G | 1144 | cWW | cSH | tWW | tWW | cSH | cWW | ||
| 4 | IL_4WF9_039 | 4WF9 | 0.3852 | 1 | Kink-turn related | X | LSU rRNA | U | 1062 | U | 1063 | A | 1064 | A | 1065 | G | 1066 | U | 1067 | G | 1068 | * | C | 1184 | U | 1185 | A | 1186 | A | 1188 | cWW | cSH | cWW | ||||
| 5 | IL_4IOA_035 | 4IOA | 0.4077 | 2 | X | LSU rRNA | C | 1029 | U | 1030 | C | 1031 | A | 1032 | G | 1033 | U | 1034 | G | 1035 | * | C | 1150 | U | 1151 | A | 1153 | G | 1155 | cWW | ntWH | ntHW | ntWW | cSH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUAAGUG*CUAAA | 2 |
| UUAAGUG*CUCAAA | 1 |
| CUAAGUG*CUUAAG | 1 |
| CUCAGUG*CUCAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAAGU*UAA | 2 |
| UAAGU*UCAA | 1 |
| UAAGU*UUAA | 1 |
| UCAGU*UCAA | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.2 | 3.11 | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-09-26 | 2018-10-19 | 2018-11-16 | 2018-12-14 | 2019-01-11 | 2019-02-08 | 2019-03-08 | 2019-04-05 | 2019-05-03 | 2019-05-31 | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 | 2019-11-13 | 2019-12-11 | 2020-01-08 | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 | 2021-04-28 | 2021-05-26 | 2021-06-23 | 2021-07-21 |
| Status | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | New id, no parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Kink-turn related (3)
- (2)
- Basepair signature
- cWW-tWW-cSH-L-tWW-cSH-cWW
- Heat map statistics
- Min 0.07 | Avg 0.22 | Max 0.41
Coloring options: