IL_4IOA_036
3D structure
- PDB id
- 4IOA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GGUUAAG*CGAAAAUGAUCGGGGC
- Length
- 23 nucleotides
- Bulged bases
- 4IOA|1|X|U|1037, 4IOA|1|X|A|1138, 4IOA|1|X|U|1141
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_67703.1
- Basepair signature
- cWW-tWW-L-tWH-R-R-R-R-cSH-R-R-L-tHH-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
4IOA|1|X|G|1035
4IOA|1|X|G|1036
4IOA|1|X|U|1037
4IOA|1|X|U|1038
4IOA|1|X|A|1039
4IOA|1|X|A|1040
4IOA|1|X|G|1041
*
4IOA|1|X|C|1135
4IOA|1|X|G|1136
4IOA|1|X|A|1137
4IOA|1|X|A|1138
4IOA|1|X|A|1139
4IOA|1|X|A|1140
4IOA|1|X|U|1141
4IOA|1|X|G|1142
4IOA|1|X|A|1143
4IOA|1|X|U|1144
4IOA|1|X|C|1145
4IOA|1|X|G|1146
4IOA|1|X|G|1147
4IOA|1|X|G|1148
4IOA|1|X|G|1149
4IOA|1|X|C|1150
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain 4
- 50S ribosomal protein L36
- Chain B
- 50S ribosomal protein L3
- Chain G
- 50S ribosomal protein L13
- Chain J
- 50S ribosomal protein L16
- Chain Y
- 5S ribosomal RNA; 5S rRNA
Coloring options: