IL_4IOA_038

3D structure

PDB id

4IOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UCGU*ACGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UCGU,ACGA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4IOA_038 not in the Motif Atlas

Homologous match to IL_5J7L_283

Geometric discrepancy: 0.2716

The information below is about IL_5J7L_283

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

4IOA|1|X|U|1048
4IOA|1|X|C|1049
4IOA|1|X|G|1050
4IOA|1|X|U|1051
*
4IOA|1|X|A|1126
4IOA|1|X|C|1127
4IOA|1|X|G|1128
4IOA|1|X|A|1129

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain E

50S ribosomal protein L6

Chain J

50S ribosomal protein L16

Chain S

50S ribosomal protein L25