IL_4IOA_039

3D structure

PDB id

4IOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAUAGACAG*UCGAG

Length

14 nucleotides

Bulged bases

4IOA|1|X|A|1057

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_34363.4

Basepair signature

cWW-cSS-tSS-L-tSH-tSS-L-R-bif-cWW

Number of instances in this motif group

6

Unit IDs

4IOA|1|X|C|1054
4IOA|1|X|A|1055
4IOA|1|X|U|1056
4IOA|1|X|A|1057
4IOA|1|X|G|1058
4IOA|1|X|A|1059
4IOA|1|X|C|1060
4IOA|1|X|A|1061
4IOA|1|X|G|1062
*
4IOA|1|X|U|1119
4IOA|1|X|C|1120
4IOA|1|X|G|1121
4IOA|1|X|A|1122
4IOA|1|X|G|1123

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L6