Motif IL_34363.4 Version IL_34363.4 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 11 | 12 | 13 | 1-5 | 1-13 | 2-12 | 4-12 | 5-13 | 7-10 | 8-9 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2QBG_042 | 2QBG | 0.2232 | 1 | B | 23S rRNA | C | 1043 | C | 1044 | C | 1045 | G | 1047 | A | 1048 | C | 1049 | A | 1050 | G | 1051 | * | U | 1108 | C | 1109 | G | 1110 | A | 1111 | G | 1112 | csS | cWW | ntsS | tSH | tSs | cWW | ||
| 2 | IL_4W21_083 | 4W21 | 0.2059 | 1 | 5 | 28S ribosomal RNA | U | 1957 | A | 1958 | U | 1959 | G | 1961 | A | 1962 | C | 1963 | A | 1964 | G | 1965 | * | C | 2022 | C | 2023 | G | 2024 | A | 2025 | A | 2026 | cWW | tsS | ntSH | tSs | ncWW | cWW | ||
| 3 | IL_1S72_043 | 1S72 | 0.0000 | 1 | Kink-turn (H) | 0 | LSU rRNA | C | 1147 | C | 1148 | U | 1149 | G | 1151 | A | 1152 | C | 1153 | A | 1154 | G | 1155 | * | C | 1212 | C | 1213 | G | 1214 | A | 1215 | G | 1216 | csS | cWW | tsS | tSH | tSs | cWW | |
| 4 | IL_3U5H_059 | 3U5H | 0.1528 | 1 | 5 | 25S rRNA | U | 1218 | C | 1219 | U | 1220 | G | 1222 | A | 1223 | C | 1224 | A | 1225 | G | 1226 | * | C | 1283 | C | 1284 | G | 1285 | A | 1286 | A | 1287 | cWW | tsS | tSH | cWW | ||||
| 5 | IL_4CUV_060 | 4CUV | 0.2145 | 1 | 1 | 25S RRNA | U | 1218 | C | 1219 | U | 1220 | G | 1222 | A | 1223 | C | 1224 | A | 1225 | G | 1226 | * | C | 1283 | C | 1284 | G | 1285 | A | 1286 | A | 1287 | cWW | ntsS | ntSH | ntHS | cWW | |||
| 6 | IL_4IOA_039 | 4IOA | 0.3068 | 1 | Kink-turn (H) | X | LSU rRNA | C | 1054 | A | 1055 | U | 1056 | G | 1058 | A | 1059 | C | 1060 | A | 1061 | G | 1062 | * | U | 1119 | C | 1120 | G | 1121 | A | 1122 | G | 1123 | cWW | ntSH | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UCUAGACAG*CCGAA | 2 |
| CCCAGACAG*UCGAG | 1 |
| UAUAGACAG*CCGAA | 1 |
| CCUAGACAG*CCGAG | 1 |
| CAUAGACAG*UCGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUAGACA*CGA | 3 |
| AUAGACA*CGA | 2 |
| CCAGACA*CGA | 1 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-07 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_34363.4 | Only in the parent motif |
|---|---|---|---|
| IL_34363.3 Compare | IL_2QBG_042, IL_4IOA_039, IL_1S72_043, IL_4CUV_060, IL_3U5H_059 | IL_4W21_083 |
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Kink-turn (H) (2)
- Basepair signature
- cWW-cSS-tSS-L-tSH-tSS-L-R-bif-cWW
- Heat map statistics
- Min 0.15 | Avg 0.23 | Max 0.37
Coloring options: