IL_4IOA_047

3D structure

PDB id

4IOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

AUGAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.3

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

14

Unit IDs

4IOA|1|X|A|1275
4IOA|1|X|U|1276
4IOA|1|X|G|1277
4IOA|1|X|A|1278
4IOA|1|X|G|1279
4IOA|1|X|U|1280
4IOA|1|X|A|1281
4IOA|1|X|A|1282
*
4IOA|1|X|U|1994
4IOA|1|X|G|1995
4IOA|1|X|A|1996
4IOA|1|X|A|1997
4IOA|1|X|A|1998
4IOA|1|X|U|1999
4IOA|1|X|U|2000

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain P

50S ribosomal protein L22

Chain Z

50S ribosomal protein L32