#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 6 7 8break 9 10 11 12 13 14 151-152-143-134-125-66-117-108-9
1 IL_4IOA_0074IOA0.263308x7 Sarcin-Ricin; G-bulgeX LSU rRNAG215U216U217A218G219U220A221G222*C230G231A232A233C234C235C236cWWtSHtHHcSHtWHtHScWW
2 IL_4WF9_0094WF90.222108x7 Sarcin-Ricin; G-bulgeX LSU rRNAC241U242U243A244G245U246A247G248*C256G257A258A259A260C261G262cWWtSHtHHcSHtWHtHScWW
3 IL_5TBW_1165TBW0.218308x7 Sarcin-Ricin; G-bulge1 LSU rRNAC3018U3019U3020A3021G3022U3023A3024C3025*G3030G3031A3032A3033C3034A3035G3036cWWtSHtHHcSHtWHtHScWW
4 IL_1Q96_0011Q960.174008x7 Sarcin-Ricin; G-bulgeAsarcin/ricin 28S rRNAC6U7C8A9G10U11A12U13*A18G19A20A21C22C23G24cWWtSHcSHtWHtHScWW
5 IL_1JBR_0011JBR0.166908x7 Sarcin-Ricin; G-bulgeC+FRNA (18-mer) + RNA (13-mer)C6U7C8A9G10U11A12C13*G18G19A20A21C22C23G24cWWtSHtHHcSHtWHtHScWW
6 IL_5J7L_2505J7L0.072408x7 Sarcin-Ricin; G-bulgeDA LSU rRNAC201U202A203A204G205U206A207C208*G188G189A190A191C192U193G194cWWcwWtSHtHHcSHtWHtHScWW
7 IL_4V9F_0064V9F0.068108x7 Sarcin-Ricin; G-bulge0 LSU rRNAC171U172C173A174G175U176A177U178*A158G159A160A161C162U163G164cWWcwWtSHtHHcSHtWHtHScWW
8 IL_4Y4O_1844Y4O0.000008x7 Sarcin-Ricin; G-bulge2A LSU rRNAC201U202C203A204G205U206A207C208*G188G189A190A191C192U193G194cWWcwWtSHtHHcSHtWHtHScWW
9 IL_4IOA_0064IOA0.062008x7 Sarcin-Ricin; G-bulgeX LSU rRNAC178U179C180A181G182U183A184C185*G165G166A167A168C169U170G171cWWcwWntSHtHHcSHtWHtHScWW
10 IL_5TBW_3775TBW0.221318x7 Sarcin-Ricin; G-bulgeAS 5S rRNAA72C74G75A76G77U78A79G80*C100G101A102A103A104C105U106cWWcWwtSHtHHcSHtWHtHScWW
11 IL_5J7L_2895J7L0.233608x7 Sarcin-Ricin; G-bulgeDA LSU rRNAA1262U1263A1264A1265G1266U1267A1268A1269*U2011G2012A2013A2014A2015U2016U2017cWWcwWtSHtHHcSHtWHtHScWW
12 IL_4Y4O_2254Y4O0.255308x7 Sarcin-Ricin; G-bulge2A LSU rRNAA1262U1263G1264A1265G1266U1267A1268A1269*U2011G2012A2013A2014A2015U2016U2017cWWcwWtSHtHHcSHtWHtHScWW
13 IL_4IOA_0474IOA0.330308x7 Sarcin-Ricin; G-bulgeX LSU rRNAA1275U1276G1277A1278G1279U1280A1281A1282*U1994G1995A1996A1997A1998U1999U2000cWWcwWtSHcSHtWHtHScWW
14 IL_4WF9_0484WF90.353408x7 Sarcin-Ricin; G-bulgeX LSU rRNAG1300U1301G1302A1303G1304U1305A1306G1307*U2038G2039A2040A2041A2042U2043C2044cWWcwWtSHtHHncSWtHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
CUCAGUAC*GGAACUG2
AUGAGUAA*UGAAAUU2
GUUAGUAG*CGAACCC1
CUUAGUAG*CGAAACG1
CUUAGUAC*GGAACAG1
CUCAGUAU*AGAACCG1
CUCAGUAC*GGAACCG1
CUAAGUAC*GGAACUG1
CUCAGUAU*AGAACUG1
ACCGAGUAG*CGAAACU1
AUAAGUAA*UGAAAUU1
GUGAGUAG*UGAAAUC1
Non-Watson-Crick part of the motif
SequenceCounts
UCAGUA*GAACU3
UGAGUA*GAAAU3
UCAGUA*GAACC2
UUAGUA*GAACC1
UUAGUA*GAAAC1
UUAGUA*GAACA1
UAAGUA*GAACU1
CCGAGUA*GAAAC1
UAAGUA*GAAAU1

Release history

Release3.123.133.143.153.163.173.183.193.203.213.223.233.243.253.263.273.283.293.303.313.323.333.343.353.363.373.383.393.403.413.423.433.443.453.463.47
Date2018-11-162018-12-142019-01-112019-02-082019-03-082019-04-052019-05-032019-05-312019-06-282019-07-262019-08-232019-09-192019-10-162019-11-132019-12-112020-01-082020-02-052020-03-042020-04-012020-04-292020-05-272020-06-242020-07-222020-08-192020-09-162020-10-142020-11-112020-12-092021-01-062021-02-032021-03-032021-03-312021-04-282021-05-262021-06-232021-07-21
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • 8x7 Sarcin-Ricin; G-bulge (14)
  • Basepair signature
    cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
    Heat map statistics
    Min 0.06 | Avg 0.23 | Max 0.37
    Help

    Coloring options:

    Copyright 2025 BGSU RNA group. Page generated in 0.8219 s