IL_4IOA_051

3D structure

PDB id

4IOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGAGG*CGCAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_39521.3

Basepair signature

cWW-tSH-tWH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

4IOA|1|X|U|1370
4IOA|1|X|G|1371
4IOA|1|X|A|1372
4IOA|1|X|G|1373
4IOA|1|X|G|1374
*
4IOA|1|X|C|1383
4IOA|1|X|G|1384
4IOA|1|X|C|1385
4IOA|1|X|A|1386
4IOA|1|X|G|1387

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain A

50S ribosomal protein L2

Chain U

50S ribosomal protein L28