3D structure

PDB id
4IOA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
UGGAG*CGAAA
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
Triple sheared
Broad Annotation
No text annotation
Motif group
IL_56467.4
Basepair signature
cWW-tSH-tHS-tHS-cWW
Number of instances in this motif group
32

Unit IDs

4IOA|1|X|U|1848
4IOA|1|X|G|1849
4IOA|1|X|G|1850
4IOA|1|X|A|1851
4IOA|1|X|G|1852
*
4IOA|1|X|C|1865
4IOA|1|X|G|1866
4IOA|1|X|A|1867
4IOA|1|X|A|1868
4IOA|1|X|A|1869

Current chains

Chain X
23S ribosomal RNA

Nearby chains

Chain U
50S ribosomal protein L28

Coloring options:

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