IL_56467.4

#S	Loop id	PDB	Disc	Annotation	Chain(s)	Standardized name		1		2		3		4		5	break		6		7		8		9		10	1-10	2-9	2-10	3-8	4-7	5-6
1	IL_4V88_474	4V88	0.3693	Triple sheared	A6	SSU rRNA	A	1719	G	1720	A	1721	A	1722	U	1723	*	A	1678	G	1679	G	1680	A	1681	U	1682	cWW			tHS	tHS	cWW
2	IL_5TBW_106	5TBW	0.4645	Triple sheared	1	LSU rRNA	C	2849	G	2850	A	2851	C	2852	A	2853	*	U	2835	C	2836	A	2837	A	2838	G	2839	cWW	tSH		ntHS		cWW
3	IL_4Y4O_270	4Y4O	0.4181	Triple sheared	2A	LSU rRNA	C	2480	G	2481	G	2482	C	2483	G	2484	*	C	2466	C	2467	G	2468	A	2469	G	2470	cWW	tSH			cBW	cWW
4	IL_4IOA_089	4IOA	0.3996	Triple sheared	X	LSU rRNA	C	2459	G	2460	G	2461	C	2462	G	2463	*	C	2445	C	2446	G	2447	A	2448	G	2449	cWW	tSH		ntHS	ncBW	cWW
5	IL_4WF9_093	4WF9	0.3441	Triple sheared	X	LSU rRNA	C	2507	G	2508	A	2509	C	2510	G	2511	*	C	2493	C	2494	A	2495	A	2496	G	2497	cWW	ntSH		tHS	cBW	cWW
6	IL_5J7L_338	5J7L	0.3381	Triple sheared	DA	LSU rRNA	C	2480	G	2481	A	2482	C	2483	G	2484	*	C	2466	C	2467	A	2468	A	2469	G	2470	cWW	tSH		ntHS	cBW	cWW
7	IL_4WFL_001	4WFL	0.3117	Triple sheared	A	LSRP RNA	C	91	G	92	A	93	C	94	A	95	*	U	72	C	73	G	74	A	75	G	76	cWW	tSH		tHS	cBW	cWW
8	IL_5J7L_274	5J7L	0.2989	Triple sheared	DA	LSU rRNA	C	898	A	899	A	900	C	901	C	902	*	G	875	C	876	A	877	A	878	G	879	cWW	tSH		ntHS	cBW	cWW
9	IL_1U6B_002	1U6B	0.3509	Triple sheared	B	197-MER	G	56	A	57	A	58	A	59	C	60	*	G	84	C	85	A	86	A	87	C	88	cWW	tSH		tHS	ncWW	cWW
10	IL_4V9F_085	4V9F	0.3135	Triple sheared	0	LSU rRNA	C	2515	G	2516	A	2517	C	2518	C	2519	*	G	2501	C	2502	A	2503	A	2504	G	2505	cWW	tSH		ntHS	cBW	cWW
11	IL_5J7L_056	5J7L	0.4210	Triple sheared	AA	SSU rRNA	C	1259	G	1260	A	1261	C	1262	C	1263	*	G	1272	C	1273	A	1274	A	1275	G	1276	cWW	tSH		tHS	ncBW	cWW
12	IL_4V9F_027	4V9F	0.3903	Triple sheared	0	LSU rRNA	U	794	G	795	A	796	A	797	G	798	*	U	815	G	816	G	817	A	818	A	819	cWW	ntSH		tHS	tHS	cWW
13	IL_5TBW_030	5TBW	0.4364	Triple sheared	1	LSU rRNA	U	834	G	835	A	836	A	837	G	838	*	U	855	G	856	G	857	A	858	G	859	cWW	tSH		tHS	tHS	cWW
14	IL_5J7L_263	5J7L	0.4072	Triple sheared	DA	LSU rRNA	U	703	G	704	A	705	A	706	G	707	*	U	724	G	725	G	726	A	727	G	728	cWW	tSH		tHS	tHS	cWW
15	IL_4Y4O_198	4Y4O	0.4015	Triple sheared	2A	LSU rRNA	U	703	G	704	A	705	A	706	G	707	*	U	724	G	725	G	726	A	727	G	728	cWW	tSH		tHS	tHS	cWW
16	IL_4WF9_024	4WF9	0.3992	Triple sheared	X	LSU rRNA	U	748	G	749	A	750	A	751	G	752	*	U	769	G	770	G	771	A	772	G	773	cWW			tHS	tHS	cWW
17	IL_5J7L_310	5J7L	0.2848	Triple sheared	DA	LSU rRNA	U	1720	G	1721	A	1722	G	1723	G	1724	*	U	1736	G	1737	G	1738	A	1739	G	1740	cWW	tSH		tHS	ntHS	cWW
18	IL_2A64_005	2A64	0.2655	Triple sheared	A	ribonuclease P RNA	C	284	G	285	A	286	A	287	G	288	*	C	297	G	298	G	299	A	300	G	301	cWW	tSH		ntHS	tHS	cWW
19	IL_2A64_006	2A64	0.2147	Triple sheared	A	ribonuclease P RNA	C	378	G	379	A	380	A	381	G	382	*	C	347	G	348	G	349	A	350	G	351	cWW			tHS	tHS	cWW
20	IL_4IOA_070	4IOA	0.1739	Triple sheared	X	LSU rRNA	C	1865	G	1866	A	1867	A	1868	A	1869	*	U	1848	G	1849	G	1850	A	1851	G	1852	cWW	ntSH		tHS	tHS	cWW
21	IL_4Y4O_248	4Y4O	0.0000	Triple sheared	2A	LSU rRNA	C	1882	G	1883	A	1884	A	1885	C	1886	*	G	1856	G	1857	G	1858	A	1859	G	1860	cWW	tSH		tHS	tHS	cWW
22	IL_3IGI_002	3IGI	0.2425	Triple sheared	A	Group IIC intron	C	70	U	71	A	72	A	73	C	74	*	G	113	G	114	A	115	C	116	G	117	cWW	ntSH			tHS	cWW
23	IL_3IWN_002	3IWN	0.2994	Triple sheared	A	C-di-GMP riboswitch	C	12	A	13	A	14	A	15	C	16	*	G	31	G	32	A	33	C	34	G	35	cWW	ntSH			tHS	cWW
24	IL_5TBW_067	5TBW	0.1982	Triple sheared	1	LSU rRNA	U	1645	G	1646	A	1647	A	1648	U	1649	*	A	1806	G	1807	G	1808	A	1809	A	1810	cWW	tSH		tHS	tHS	cWW
25	IL_4WF9_074	4WF9	0.2874	Triple sheared	X	LSU rRNA	C	1909	G	1910	A	1911	A	1912	U	1913	*	A	1883	G	1884	G	1885	A	1886	G	1887	ncWW		cSW	tHS	ntHS	cWW
26	IL_4YAZ_006	4YAZ	0.4321	Triple sheared	R	Cyclic di-GMP-I riboswitch	U	16	A	17	A	18	A	19	C	20	*	G	35	G	36	G	37	C	38	G	39	cWW	ntSH			tHS	cWW
27	IL_3MXH_002	3MXH	0.3819	Triple sheared	R	c-di-GMP riboswitch	C	22	A	23	A	24	A	25	C	26	*	G	41	G	42	A	43	C	44	G	45	cWW	ntSH			tHS	cWW
28	IL_4V9F_020	4V9F	0.5205	AAA cross-strand stack	0	LSU rRNA	C	663	U	664	A	665	A	666	C	667	*	G	679	G	680	G	681	A	682	G	683	cWW	ntWH			tHS	cWW
29	IL_5J7L_258	5J7L	0.5278	AAA cross-strand stack	DA	LSU rRNA	U	606	U	607	A	608	A	609	C	610	*	G	618	G	619	G	620	A	621	G	622	cWW	ntWH			tHS	cWW
30	IL_4Y4O_193	4Y4O	0.5394	AAA cross-strand stack	2A	LSU rRNA	U	606	U	607	A	608	A	609	G	610	*	C	618	G	619	G	620	A	621	G	622	cWW	ntWH			tHS	cWW
31	IL_4WF9_019	4WF9	0.6284	AAA cross-strand stack	X	LSU rRNA	U	649	U	650	A	651	A	652	G	653	*	U	663	G	664	G	665	A	666	G	667	cWW	ntWW			tHS	cWW
32	IL_4IOA_012	4IOA	0.6481	AAA cross-strand stack	X	LSU rRNA	U	616	U	617	A	618	A	619	G	620	*	C	629	G	630	G	631	A	632	G	633	cWW				tHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UGAAG*UGGAG	4
CGGCG*CCGAG	2
CGACG*CCAAG	2
CGACC*GCAAG	2
CGAAG*CGGAG	2
CAAAC*GGACG	2
UUAAG*CGGAG	2
AGAAU*AGGAU	1
CGACA*UCAAG	1
CGACA*UCGAG	1
CAACC*GCAAG	1
GAAAC*GCAAC	1
UGAAG*UGGAA	1
UGAGG*UGGAG	1
CGAAA*UGGAG	1
CGAAC*GGGAG	1
CUAAC*GGACG	1
UGAAU*AGGAA	1
CGAAU*AGGAG	1
UAAAC*GGGCG	1
CUAAC*GGGAG	1
UUAAC*GGGAG	1
UUAAG*UGGAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GAA*GGA	12
GAC*CAA	5
UAA*GGA	5
GGC*CGA	2
AAA*GAC	2
GAC*CGA	1
AAC*CAA	1
AAA*CAA	1
GAG*GGA	1
UAA*GAC	1
AAA*GGC	1

Release history

Release	3.18	3.19	3.20	3.21	3.22	3.23	3.24	3.25	3.26	3.27	3.28	3.29	3.30	3.31	3.32	3.33	3.34	3.35	3.36	3.37	3.38	3.39	3.40	3.41	3.42	3.43	3.44	3.45	3.46	3.47
Date	2019-05-03	2019-05-31	2019-06-28	2019-07-26	2019-08-23	2019-09-19	2019-10-16	2019-11-13	2019-12-11	2020-01-08	2020-02-05	2020-03-04	2020-04-01	2020-04-29	2020-05-27	2020-06-24	2020-07-22	2020-08-19	2020-09-16	2020-10-14	2020-11-11	2020-12-09	2021-01-06	2021-02-03	2021-03-03	2021-03-31	2021-04-28	2021-05-26	2021-06-23	2021-07-21
Status	Updated, 2 parents	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_56467.4 Version IL_56467.4 of this group appears in releases 3.18 to 3.47 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_56467.4 Version IL_56467.4 of this group appears in releases 3.18 to 3.47

Download

Csv

Json