Motif IL_38958.4 Version IL_38958.4 of this group appears in releases 3.25 to 3.47

Download

Csv

Json

Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)		1		2		3	break		4		5		6	1-5	1-6	2-5	3-4
1	IL_4Y4O_263	4Y4O	0.5535	2	Isolated tHS basepair with bulges	2A	C	2297	A	2298	G	2299	*	C	2317	G	2318	G	2321		cWW		cWW
2	IL_4V9F_080	4V9F	0.2908	2	Isolated tHS basepair with bulges	0	C	2331	A	2332	G	2333	*	C	2351	G	2352	G	2355		cWW	tHS	cWW
3	IL_4WF9_086	4WF9	0.2222	2	Isolated tHS basepair with bulges	X	C	2324	A	2325	G	2326	*	C	2344	A	2345	G	2348		cWW	tHS	cWW
4	IL_4IOA_082	4IOA	0.2432	2	Isolated tHS basepair with bulges	X	C	2276	A	2277	A	2278	*	U	2296	G	2297	G	2300		cWW	ntHS	cWW
5	IL_5TBW_099	5TBW	0.2116	2	Isolated tHS basepair with bulges	1	C	2666	A	2667	U	2668	*	A	2686	G	2687	G	2690		cWW	tHS	cWW
6	IL_4Y4O_255	4Y4O	0.0000	1	Isolated tHS basepair with bulges	2A	C	2081	A	2082	G	2083	*	C	2236	G	2237	G	2239		cWW	tHS	cWW
7	IL_4V9F_076	4V9F	0.1000	1	Isolated tHS basepair with bulges	0	C	2122	A	2123	G	2124	*	C	2269	G	2270	G	2272		cWW	tHS	cWW
8	IL_4Y4O_189	4Y4O	0.2144	1	Isolated tHS basepair with bulges	2A	C	288	A	289	G	290	*	U	350	G	351	G	353		cWW	tHS	cWW
9	IL_5J7L_325	5J7L	0.2944	1	Isolated tHS basepair with bulges	DA	U	2081	A	2082	G	2083	*	U	2236	G	2237	G	2239		cWW	tHS	cWW
10	IL_5TBW_095	5TBW	0.2895	1	Isolated tHS basepair with bulges	1	U	2423	A	2424	G	2425	*	U	2604	G	2605	G	2607		cWW	tHS	cWW
11	IL_4IOA_077	4IOA	0.3058	1	Isolated tHS basepair with bulges	X	U	2064	A	2065	G	2066	*	C	2215	G	2216	G	2218		cWW	tHS	cWW
12	IL_4WF9_082	4WF9	0.2816	1	Isolated tHS basepair with bulges	X	U	2108	A	2109	G	2110	*	C	2263	G	2264	G	2266		cWW	tHS	cWW
13	IL_1L9A_004	1L9A	0.4274	0	Isolated tHS basepair with bulges	B	U	132	A	133	U	134	*	A	163	G	164	G	165	ncWWa	cWW	tHS	ncWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CAG*CGGG	2
UAG*UGGG	2
UAG*CGGG	2
CAG*CGGAG	1
CAG*CGAAG	1
CAG*CAUAG	1
CAA*UGUAG	1
CAU*AGUAG	1
CAG*UGGG	1
UAU*AGG	1

Non-Watson-Crick part of the motif

Sequence	Counts
A*GG	7
A*GUA	2
A*GGA	1
A*GAA	1
A*AUA	1
A*G	1

Release history

Release	3.25	3.26	3.27	3.28	3.29	3.30	3.31	3.32	3.33	3.34	3.35	3.36	3.37	3.38	3.39	3.40	3.41	3.42	3.43	3.44	3.45	3.46	3.47
Date	2019-11-13	2019-12-11	2020-01-08	2020-02-05	2020-03-04	2020-04-01	2020-04-29	2020-05-27	2020-06-24	2020-07-22	2020-08-19	2020-09-16	2020-10-14	2020-11-11	2020-12-09	2021-01-06	2021-02-03	2021-03-03	2021-03-31	2021-04-28	2021-05-26	2021-06-23	2021-07-21
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Isolated tHS basepair with bulges (13)
Basepair signature: cWW-tHS-cWW
Heat map statistics: Min 0.10 | Avg 0.32 | Max 0.75

Help

Coloring options: Nucleotide numbers

Copyright 2025 BGSU RNA group. Page generated in 0.1897 s