IL_4IOA_089

3D structure

PDB id

4IOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CCGAG*CGGCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.4

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

32

Unit IDs

4IOA|1|X|C|2445
4IOA|1|X|C|2446
4IOA|1|X|G|2447
4IOA|1|X|A|2448
4IOA|1|X|G|2449
*
4IOA|1|X|C|2459
4IOA|1|X|G|2460
4IOA|1|X|G|2461
4IOA|1|X|C|2462
4IOA|1|X|G|2463

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain J

50S ribosomal protein L16