IL_4IOA_098

3D structure

PDB id

4IOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UCUCC*GGUAG

Length

10 nucleotides

Bulged bases

4IOA|1|X|U|2668, 4IOA|1|X|C|2669

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_08296.1

Basepair signature

cWW-tSH-R-R-cWW

Number of instances in this motif group

4

Unit IDs

4IOA|1|X|U|2666
4IOA|1|X|C|2667
4IOA|1|X|U|2668
4IOA|1|X|C|2669
4IOA|1|X|C|2670
*
4IOA|1|X|G|2698
4IOA|1|X|G|2699
4IOA|1|X|U|2700
4IOA|1|X|A|2701
4IOA|1|X|G|2702

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain K

50S ribosomal protein L17

Chain M

50S ribosomal protein L19