#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3break 4 5 6 7 81-82-73-4
1 IL_4IOA_0984IOA0.14042X LSU rRNAU2666C2667C2670*G2698G2699U2700A2701G2702cWWtSHcWW
2 IL_5J7L_3485J7L0.09132DA LSU rRNAU2687G2688C2691*G2718G2719U2720A2721G2722cWWtSHcWW
3 IL_4WF9_1024WF90.00002X LSU rRNAU2714G2715C2718*G2745G2746U2747A2748G2749cWWtSHcWW
4 IL_4Y4O_2804Y4O0.124722A LSU rRNAU2687U2688C2691*G2718G2719U2720A2721G2722cWWtSHcWW

3D structures

Complete motif including flanking bases
SequenceCounts
UCUCC*GGUAG1
UGUUC*GGUAG1
UGUAC*GGUAG1
UUUCC*GGUAG1
Non-Watson-Crick part of the motif
SequenceCounts
CUC*GUA1
GUU*GUA1
GUA*GUA1
UUC*GUA1

Release history

Release3.33.43.53.63.73.83.93.103.23.113.123.133.143.153.163.173.183.193.203.213.223.233.243.253.263.273.283.293.303.313.323.333.343.353.363.373.383.393.403.413.423.433.443.453.463.47
Date2018-03-082018-04-062018-05-042018-06-012018-06-292018-07-272018-08-242018-09-212018-09-262018-10-192018-11-162018-12-142019-01-112019-02-082019-03-082019-04-052019-05-032019-05-312019-06-282019-07-262019-08-232019-09-192019-10-162019-11-132019-12-112020-01-082020-02-052020-03-042020-04-012020-04-292020-05-272020-06-242020-07-222020-08-192020-09-162020-10-142020-11-112020-12-092021-01-062021-02-032021-03-032021-03-312021-04-282021-05-262021-06-232021-07-21
StatusExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchNew id, no parentsExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (4)
  • Basepair signature
    cWW-tSH-R-R-cWW
    Heat map statistics
    Min 0.09 | Avg 0.10 | Max 0.16
    Help

    Coloring options:

    Copyright 2025 BGSU RNA group. Page generated in 0.8294 s