IL_4IOA_115

3D structure

PDB id

4IOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGAACUUUG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4IOA_115 not in the Motif Atlas

Geometric match to IL_7A0S_109

Geometric discrepancy: 0.0674

The information below is about IL_7A0S_109

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

4IOA|1|X|G|1683
4IOA|1|X|G|1684
4IOA|1|X|A|1685
4IOA|1|X|A|1686
4IOA|1|X|C|1687
4IOA|1|X|U|1688
4IOA|1|X|U|1689
4IOA|1|X|U|1690
4IOA|1|X|G|1691
*
4IOA|1|X|C|1973
4IOA|1|X|U|1974
4IOA|1|X|G|1975
4IOA|1|X|U|1976
4IOA|1|X|C|1977

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain H

50S ribosomal protein L14