IL_4IOA_117
3D structure
- PDB id
- 4IOA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- ACCCC*GAACU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4IOA_117 not in the Motif Atlas
- Homologous match to IL_5J7L_358
- Geometric discrepancy: 0.1494
- The information below is about IL_5J7L_358
- Detailed Annotation
- Symmetric double minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_58103.11
- Basepair signature
- cWW-cSH-cWS-L-tSW-R-R-cWW
- Number of instances in this motif group
- 9
Unit IDs
4IOA|1|Y|A|36
4IOA|1|Y|C|37
4IOA|1|Y|C|38
4IOA|1|Y|C|39
4IOA|1|Y|C|40
*
4IOA|1|Y|G|46
4IOA|1|Y|A|47
4IOA|1|Y|A|48
4IOA|1|Y|C|49
4IOA|1|Y|U|50
Current chains
- Chain Y
- 5S ribosomal RNA
Nearby chains
- Chain D
- 50S ribosomal protein L5
- Chain L
- 50S ribosomal protein L18
- Chain X
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: