IL_4JI1_021
3D structure
- PDB id
- 4JI1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.14 Å
Loop
- Sequence
- G(PSU)GCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 4JI1|1|A|A|532, 4JI1|1|A|U|534, 4JI1|1|A|A|535
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4JI1_021 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.2308
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
4JI1|1|A|G|515
4JI1|1|A|PSU|516
4JI1|1|A|G|517
4JI1|1|A|C|518
4JI1|1|A|C|519
4JI1|1|A|A|520
4JI1|1|A|G|521
*
4JI1|1|A|C|528
4JI1|1|A|G|529
4JI1|1|A|G|530
4JI1|1|A|U|531
4JI1|1|A|A|532
4JI1|1|A|A|533
4JI1|1|A|U|534
4JI1|1|A|A|535
4JI1|1|A|C|536
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain C
- RIBOSOMAL PROTEIN S3
- Chain D
- RIBOSOMAL PROTEIN S4
- Chain L
- RIBOSOMAL PROTEIN S12
Coloring options: