IL_4JI2_056

3D structure

PDB id

4JI2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

GAUG*CUAAUC

Length

10 nucleotides

Bulged bases

4JI2|1|A|U|1257, 4JI2|1|A|U|1278, 4JI2|1|A|A|1280, 4JI2|1|A|U|1281

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4JI2_056 not in the Motif Atlas

Homologous match to IL_6CZR_161

Geometric discrepancy: 0.2138

The information below is about IL_6CZR_161

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.1

Basepair signature

cWW-cSS-L-R-cWW

Number of instances in this motif group

3

Unit IDs

4JI2|1|A|G|1255
4JI2|1|A|A|1256
4JI2|1|A|U|1257
4JI2|1|A|G|1258
*
4JI2|1|A|C|1277
4JI2|1|A|U|1278
4JI2|1|A|A|1279
4JI2|1|A|A|1280
4JI2|1|A|U|1281
4JI2|1|A|C|1282

Current chains

Chain A

16S rRNA

Nearby chains

Chain C

RIBOSOMAL PROTEIN S3

Chain J

RIBOSOMAL PROTEIN S10

Chain N

RIBOSOMAL PROTEIN S14