IL_4JI4_033

3D structure

PDB id

4JI4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.69 Å

Loop

Sequence

GAGAG*UGGU

Length

9 nucleotides

Bulged bases

4JI4|1|A|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4JI4_033 not in the Motif Atlas

Homologous match to IL_4LFB_029

Geometric discrepancy: 0.0773

The information below is about IL_4LFB_029

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

4JI4|1|A|G|662
4JI4|1|A|A|663
4JI4|1|A|G|664
4JI4|1|A|A|665
4JI4|1|A|G|666
*
4JI4|1|A|U|740
4JI4|1|A|G|741
4JI4|1|A|G|742
4JI4|1|A|U|743

Current chains

Chain A

16S rRNA

Nearby chains

Chain F

RIBOSOMAL PROTEIN S6

Chain O

RIBOSOMAL PROTEIN S15

Chain R

RIBOSOMAL PROTEIN S18